Transcriptome analysis of phototransduction-related genes in tentacles of the sea cucumber Apostichopus japonicus

doi:10.1016/j.cbd.2020.100675

	Transcriptome analysis of phototransduction-related genes in tentacles of the sea cucumber Apostichopus japonicus
	Liu, Xiaolu 1,2,3,4; Lin, Chenggang 1,2,3,5; Sun, Lina 1,2,3; Liu, Shilin 1,2,3; Sun, Jingchun1,2,3 ; Zhang, Libin 1,2,3; Yang, Hongsheng1,2,3,5
	2020-06-01
发表期刊	COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS
ISSN	1744-117X
卷号	34 页码:11
通讯作者	Lin, Chenggang([email protected])
摘要	The sea cucumber Apostichopus japonicus (Selenka)is a typical nocturnal echinoderm, which is believed to be almost completely dependent on light intensity for the regulation of endogenous rhythms. Under conditions of high light intensity, this species shows clear evidence of light avoidance behavior, seeking out shaded areas of reef in which to reside. In this study, we performed RNA-Seq analysis to examine the tentacle transcriptome of A. japonicus specimens that had been subjected to dark and light (5 min and 1 h) conditions. We specifically focused on detecting genes involved in opsin-based light perception, including opsins and members of phototransduction-related pathways. On the basis of comparisons with both vertebrate and invertebrate phototransduction pathways, we determined that components of two of the main metazoan phototransduction pathways were altered in response to illumination. Among the key phototransduction-related genes in tentacles, we identified retinol dehydrogenase, members of the dehydrogenase/reductase family, and myosin III, and also detected a pair of visual pigment-like receptors, peropsin and peropsin-like, the homologous genes of which are believed to have the same function but show opposite expression patterns in response to different light environments. In general, the up-regulation of key genes in sea cucumber exposed to illumination indicated that the tentacles can respond to differences in the light environment at the molecular level.
关键词	Apostichopus japonicus Tentacle Transcriptome Phototransduction Opsin
DOI	10.1016/j.cbd.2020.100675
收录类别	SCI
语种	英语
资助项目	National Science Foundation for Young Scientists of China[41606171]; Marine S&T Fund of Shandong Province for Pilot National Laboratory for Marine Science and Technology (Qingdao)[2018SDKJ0502]; Science and Technology Service Network Program of Chinese Academy of Sciences[KFJ-STS-ZDTP-55]
WOS研究方向	Biochemistry & Molecular Biology ; Genetics & Heredity
WOS类目	Biochemistry & Molecular Biology ; Genetics & Heredity
WOS记录号	WOS:000537087700009
出版者	ELSEVIER SCIENCE INC
引用统计	被引频次：6[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/167630
专题	海洋生态与环境科学重点实验室
通讯作者	Lin, Chenggang
作者单位	1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Peoples R China 3.Chinese Acad Sci, Ctr Ocean Megasci, Qingdao 266071, Peoples R China 4.Ocean Univ China, Coll Marine Life Sci, Qingdao 266003, Peoples R China 5.Chinese Acad Sci, Innovat Seed Design, Wuhan 430071, Peoples R China
第一作者单位	海洋生态与环境科学重点实验室; 中国科学院海洋大科学研究中心
通讯作者单位	海洋生态与环境科学重点实验室; 中国科学院海洋大科学研究中心
推荐引用方式 GB/T 7714	Liu, Xiaolu,Lin, Chenggang,Sun, Lina,et al. Transcriptome analysis of phototransduction-related genes in tentacles of the sea cucumber Apostichopus japonicus[J]. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,2020,34:11.
APA	Liu, Xiaolu.,Lin, Chenggang.,Sun, Lina.,Liu, Shilin.,Sun, Jingchun.,...&Yang, Hongsheng.(2020).Transcriptome analysis of phototransduction-related genes in tentacles of the sea cucumber Apostichopus japonicus.COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS,34,11.
MLA	Liu, Xiaolu,et al."Transcriptome analysis of phototransduction-related genes in tentacles of the sea cucumber Apostichopus japonicus".COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY D-GENOMICS & PROTEOMICS 34(2020):11.

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