Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides

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	Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides
	Tian, C ; Wang, GC ; Ye, NH ; Zhang, BY ; Fan, XL ; Zeng, CK
	2005
发表期刊	ACTA OCEANOLOGICA SINICA
ISSN	0253-505X
卷号	24 期号:5 页码:150-161
文章类型	Article
摘要	The partial sequence of the rbcL from Bryopsis hypnoides, including the sequences of the upstream, extron and partial intron, was amplified by PCR and their sequences were determined. With Spinacia oleracea as the outgroup, neighbor-joining method and maximum parsimony method were used respectively to build phylogenetic trees according to the rbcL exon sequence among 13 species that were the typical species of six phyla. Two kinds of trees showed clearly that there were two groups among those species, the green lineage and the non-green lineage. And the relationships of algae in the green lineage were similar in the two trees but those in the non-green lineage were not consistent. Analysis of codon preference indicated that the codon preference of the rbcL exon of Bryopsis hypnoides distinctly differed from that of the relevant sequence of photosynthetic bacteria.; The partial sequence of the rbcL from Bryopsis hypnoides, including the sequences of the upstream, extron and partial intron, was amplified by PCR and their sequences were determined. With Spinacia oleracea as the outgroup, neighbor-joining method and maximum parsimony method were used respectively to build phylogenetic trees according to the rbcL exon sequence among 13 species that were the typical species of six phyla. Two kinds of trees showed clearly that there were two groups among those species, the green lineage and the non-green lineage. And the relationships of algae in the green lineage were similar in the two trees but those in the non-green lineage were not consistent. Analysis of codon preference indicated that the codon preference of the rbcL exon of Bryopsis hypnoides distinctly differed from that of the relevant sequence of photosynthetic bacteria.
关键词	Rbcl Bryopsis Hypnoides Sequence Analysis Phylogenetic Analysis Codon Preference
学科领域	Oceanography
收录类别	SCI
语种	英语
WOS记录号	WOS:000232432700018
引用统计	被引频次：5[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/3132
专题	实验海洋生物学重点实验室
作者单位	1.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China 2.Chinese Acad Sci, Grad Sch, Beijing 100039, Peoples R China 3.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Qingdao 266071, Peoples R China
推荐引用方式 GB/T 7714	Tian, C,Wang, GC,Ye, NH,et al. Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides[J]. ACTA OCEANOLOGICA SINICA,2005,24(5):150-161.
APA	Tian, C,Wang, GC,Ye, NH,Zhang, BY,Fan, XL,&Zeng, CK.(2005).Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides.ACTA OCEANOLOGICA SINICA,24(5),150-161.
MLA	Tian, C,et al."Cloning and sequence analysis of the partial sequence of the rbcL from Bryopsis hypnoides".ACTA OCEANOLOGICA SINICA 24.5(2005):150-161.

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