The complete genome of hydrocarbon-degrading Pseudoalteromonas sp. NJ289 and its phylogenetic relationship

IOCAS-IR

	The complete genome of hydrocarbon-degrading Pseudoalteromonas sp. NJ289 and its phylogenetic relationship
	LIU Fangming; WANG Yibin ; QU Changfeng; ZHENG Zhou ; MIAO Jinlai ; XU Hua ; XIAO Tian
发表期刊	Acta Oceanologica Sinica
ISSN	0253-505X
	2017-02-15
出版年	2017
卷号	v.36 期号:02 页码:92-97
文献类型	CNKI期刊论文
摘要	Genus Pseudoalteromonas belongs to Family Pseudoalteromonadaceae in Gammaproteobacteria. A cold-adapted gram-negative bacterium, hydrocarbon-degrading Pseudoalteromonas sp. NJ289, was isolated from sea-ice of the Antarctica region, and sequenced the whole genome through the next generation sequencing platform. The assembly yielded three contigs representing two chromosomes and one plasmid with the sizes of 3.2 Mb, 636 kb and 1.8 kb, respectively. The G+C contents of genome were 40.83% and included 3 589 ORFs. Functional annotation indicated some potential roles in enzymatic activity and environmental adaptability. This study may help for understanding the population diverse, evolutionary ecology and the microbial interaction.
关键词	Pseudoalteromonas low temperature environmental adaptability sequencing phylogenetic tree
CNKI专辑号	A;
CNKI专辑名称	基础科学;
CNKI专题号	A006;
CNKI专题名称	生物学;
分类号	Q933
收录类别	中科院核心 ; 中科院扩展
语种	英文;
资助项目(基金）	The National Natural Science Foundation of China under contract Nos 31200097,41576187,U1406402-5 and31202024 ; the Basic Scientific Fund for National Public Research Institutes of China under contract Nos 2013G33 and 2015G10
文献类型	CNKI期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/189401
专题	中国科学院海洋研究所
作者单位	1.InstituteofOceanology,ChineseAcademyofSciences 2.UniversityofChineseAcademyofSciences 3.TheFirstInstituteofOceanography,StateOceanicAdministration 4.KeyLaboratoryofSustainableDevelopmentofMarineFisheriesofMinistryofAgriculture,YellowSeaFisheriesResearchInstitute,ChineseAcademyofFisherySciences
推荐引用方式 GB/T 7714	LIU Fangming,WANG Yibin,QU Changfeng,et al. The complete genome of hydrocarbon-degrading Pseudoalteromonas sp. NJ289 and its phylogenetic relationship. 2017.