Seasonal and spatial variations of <i>Synechococcus</i> in abundance, pigment types, and genetic diversity in a temperate semi-enclosed bay

doi:10.3389/fmicb.2023.1322548

	*Seasonal and spatial variations of Synechococcus* in abundance, pigment types, and genetic diversity in a temperate semi-enclosed bay**
	Li, Suheng 1,2,3,4; Dong, Yi 1,2,3; Sun, Xiaoxia1,2,3,5 ; Zhao, Yuan 1,2,3; Zhao, Li 1,2,3; Zhang, Wuchang 1,2,3; Xiao, Tian 1,2,3
	2024-01-11
发表期刊	FRONTIERS IN MICROBIOLOGY
卷号	14 页码:14
通讯作者	Zhao, Li([email protected]) ; Zhang, Wuchang([email protected])
摘要	Synechococcus is abundant and globally widespread in various marine environments. Seasonal and spatial variations in Synechococcus abundance, pigment types, and genetic diversity were investigated based on flow cytometric analysis and high-throughput sequencing of cpcBA operon (encoding phycocyanin) and rpoC1 gene (encoding RNA polymerase) in a temperate semi-enclosed bay. Synechococcus abundance exhibited seasonal variations with the highest value in summer and the lowest value in winter, which was consistent with temperature variation. Three pigment types of Synechococcus type 1, type 2, and type 3 were distinguished based on cpcBA operon, which displayed obvious variations spatially between the inner and the outer bay. Freshwater discharge and water turbidity played important roles in regulating Synechococcus pigment types. Synechococcus assemblages were phylogenetically diverse (12 different lineages) based on rpoC1 gene and dominated by three core lineages S5.1-I, S5.1-IX, and S5.2-CB5 in different seasons. Our study demonstrated that Synechococcus abundance, pigment types, and genetic diversity displayed variations seasonally and spatially by different techniques, which were mainly driven by temperature, salinity, nutrients, and turbidity. The combination of more technical means provides more information for studying Synechococcus distribution. In this study, three pigment types of Synechococcus were discriminated simultaneously by dual lasers flow cytometer for the first time.
关键词	Synechococcus pigment types cpcBA operon genetic diversity rpoC1 gene co-dominate temperate semi-enclosed bay
DOI	10.3389/fmicb.2023.1322548
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China (NSFC)[U22A20583]; National Natural Science Foundation of China (NSFC)[42076139]; Key Deployment Project of Center for Ocean Mega-Science, Chinese Academy of Sciences[COMS2020Q09]; Sino-French International Research Project (CNR-CAS) Dynamics and Function of Marine Microorganisms
WOS研究方向	Microbiology
WOS类目	Microbiology
WOS记录号	WOS:001150440300001
出版者	FRONTIERS MEDIA SA
WOS关键词	EAST CHINA SEA ; MARINE SYNECHOCOCCUS ; PHYLOGENETIC DIVERSITY ; COMMUNITY STRUCTURE ; COASTAL WATERS ; CHESAPEAKE BAY ; PACIFIC-OCEAN ; PICOCYANOBACTERIA ; PROCHLOROCOCCUS ; RED
引用统计	被引频次：1[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/184342
专题	海洋生态与环境科学重点实验室胶州湾海洋生态系统国家野外研究站
通讯作者	Zhao, Li; Zhang, Wuchang
作者单位	1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Peoples R China 3.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Peoples R China 4.Univ Chinese Acad Sci, Beijing, Peoples R China 5.Chinese Acad Sci, Jiaozhou Bay Marine Ecosyst Res Stn, Inst Oceanol, Qingdao, Peoples R China
第一作者单位	中国科学院海洋研究所
通讯作者单位	中国科学院海洋研究所
推荐引用方式 GB/T 7714	Li, Suheng,Dong, Yi,Sun, Xiaoxia,et al. Seasonal and spatial variations of Synechococcus in abundance, pigment types, and genetic diversity in a temperate semi-enclosed bay[J]. FRONTIERS IN MICROBIOLOGY,2024,14:14.
APA	Li, Suheng.,Dong, Yi.,Sun, Xiaoxia.,Zhao, Yuan.,Zhao, Li.,...&Xiao, Tian.(2024).Seasonal and spatial variations of Synechococcus in abundance, pigment types, and genetic diversity in a temperate semi-enclosed bay.FRONTIERS IN MICROBIOLOGY,14,14.
MLA	Li, Suheng,et al."Seasonal and spatial variations of Synechococcus in abundance, pigment types, and genetic diversity in a temperate semi-enclosed bay".FRONTIERS IN MICROBIOLOGY 14(2024):14.