| Characterization and Comparison of Eye Development and Phototransduction Genes in Deep- and Shallow-Water Shrimp Alvinocaris longirostris and Palaemon carinicauda | |
Hui, Min1,2,3; Xin, Qian1,2,3; Cheng, Jiao1,2,3; Sha, Zhongli1,2,3
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| 2022-08-01 | |
| 发表期刊 | DIVERSITY-BASEL
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| 卷号 | 14期号:8页码:14 |
| 通讯作者 | Hui, Min([email protected]) ; Sha, Zhongli([email protected]) |
| 摘要 | The investigations of the molecular components of eye development and phototransduction in deep-sea species are important to elucidate the mechanism of their adaptation to dim light. In this study, eye transcriptomes of the shrimp Alvinocaris longirostris from the deep-sea chemosynthetic ecosystem and the shallow-water shrimp Palaemon carinicauda were compared. Two Pax6 homologs with low expression levels were identified in both species, which are essential transcription factors in eye development. This finding implies that the development of the two shrimp eyes at early embryo-larvae stages might be similar. The multiple components of the phototransduction pathway were identified in both species. However, the number of phototransduction components was significantly reduced in A. longirostris, as well as expression level. Particularly, short-wavelength/UV-sensitive (SWS/UVS) opsins were absent in A. longirostris and only one putative middle-wavelength-sensitive (MWS) opsin was identified in this species. The conserved sites and structures of the putative LWS opsins were found between deep-sea and shallow-water decapods, indicating that the opsins in deep-sea crustaceans may also conserve their spectral absorption and signal transduction function. Phylogenetic analyses supported the monophyly of LWS opsins and SWS/UVS opsins in arthropods, while the MWS clade fell outside of the main arthropod LWS clade. The results are expected to provide baseline for study of visual adaptation in deep-sea shrimps. |
| 关键词 | alvinocarididae deep sea opsin pax 6 phototransduction transcriptome |
| DOI | 10.3390/d14080653 |
| 收录类别 | SCI |
| 语种 | 英语 |
| 资助项目 | Key Deployment Project of Centre for Ocean MegaResearch of Science, Chinese Academy of Sciences (CAS)[COMS2019Q042]; National Natural Science Foundation of China[31872215]; National Science Foundation for Distinguished Young Scholars[42025603]; Strategic Priority Research Program of CAS[XDB42000000] |
| WOS研究方向 | Biodiversity & Conservation ; Environmental Sciences & Ecology |
| WOS类目 | Biodiversity Conservation ; Ecology |
| WOS记录号 | WOS:000845980000001 |
| 出版者 | MDPI |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.qdio.ac.cn/handle/337002/180874 |
| 专题 | 海洋生物分类与系统演化实验室 实验海洋生物学重点实验室 |
| 通讯作者 | Hui, Min; Sha, Zhongli |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, Dept Marine Organism Taxon & Phylogeny, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Shandong Prov Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China |
| 推荐引用方式 GB/T 7714 | Hui, Min,Xin, Qian,Cheng, Jiao,et al. Characterization and Comparison of Eye Development and Phototransduction Genes in Deep- and Shallow-Water Shrimp Alvinocaris longirostris and Palaemon carinicauda[J]. DIVERSITY-BASEL,2022,14(8):14. |
| APA | Hui, Min,Xin, Qian,Cheng, Jiao,&Sha, Zhongli.(2022).Characterization and Comparison of Eye Development and Phototransduction Genes in Deep- and Shallow-Water Shrimp Alvinocaris longirostris and Palaemon carinicauda.DIVERSITY-BASEL,14(8),14. |
| MLA | Hui, Min,et al."Characterization and Comparison of Eye Development and Phototransduction Genes in Deep- and Shallow-Water Shrimp Alvinocaris longirostris and Palaemon carinicauda".DIVERSITY-BASEL 14.8(2022):14. |
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| diversity-14-00653-v（2512KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 浏览 | |
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