Insights into adaptive divergence of Japanese mantis shrimp Oratosquilla oratoria inferred from comparative analysis of full-length transcriptomes

doi:10.3389/fmars.2022.975686

	Insights into adaptive divergence of Japanese mantis shrimp Oratosquilla oratoria inferred from comparative analysis of full-length transcriptomes
	Cheng, Jiao 1,2,3; Zhang, Liwen 4; Hui, Min 1,2,3; Li, Yuan 5; Sha, Zhongli1,2,3,4
	2022-08-23
发表期刊	FRONTIERS IN MARINE SCIENCE
卷号	9 页码:15
通讯作者	Sha, Zhongli([email protected])
摘要	The heterogeneous seascapes in the northwestern Pacific (NWP) can be important selective forces driving adaptive divergence of marine coastal species distributed along the gradients. Here, we tested this hypothesis in Japanese mantis shrimp (Oratosquilla oratoria) with a wide distribution in the NWP and a significant north-south population structure. To this end, the full-length (FL) transcriptomes of northern and southern O. oratoria were firstly sequenced using PacBio single molecule real-time sequencing technology. Based on the FL transcriptome data, we captured large-scale FL transcripts of O. oratoria and predicted the FL transcriptome structure, including coding region, transcription factor and long noncoding RNA. To reveal the divergence between northern and southern O. oratoria, we identified 2,182 pairs of orthologous genes and inferred their sequence divergences. The average differences in coding, 5' untranslated and 3' untranslated region were 1.44%, 2.79% and 1.46%, respectively, providing additional support to previous proposition that northern and southern O. oratoria are two species. We provided further evolutionary context to our analysis by identifying positive selected genes (PSGs) between northern and southern O. oratoria. In total, 98 orthologs were found evolving under positive selection and involved several environmentally responsive genes associated with stress response, immunity and cytoskeletal organization, etc. Furthermore, we found PSGs also diverged in gene expression response of northern and southern O. oratoria to heat stress. These findings not only highlight the importance of genetic variation in these genes in adapting to environmental changes in O. oratoria, but also suggest that natural selection may act on the plasticity of gene expression to facilitate O. oratoria adaptation to environmental gradients. Overall, our work contributes to understanding how marine coastal species has evolved to adapt to heterogeneous seascapes in the NWP.
关键词	marine crustacean adaptive divergence natural selection expression plasticity full-length transcriptome seascape heterogeneity
DOI	10.3389/fmars.2022.975686
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China; Open Fund of CAS Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences; Strategic Priority Research Program of the Chinese Academy of Sciences; National Key R&D Program of China; [31872569]; [KF2021N002]; [XDB42000000]; [2018YFD0900804]
WOS研究方向	Environmental Sciences & Ecology ; Marine & Freshwater Biology
WOS类目	Environmental Sciences ; Marine & Freshwater Biology
WOS记录号	WOS:000850659600001
出版者	FRONTIERS MEDIA SA
引用统计	被引频次：4[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/180850
专题	海洋生物分类与系统演化实验室实验海洋生物学重点实验室
通讯作者	Sha, Zhongli
作者单位	1.Chinese Acad Sci, Inst Oceanol, Dept Marine Organism Taxon & Phylogeny, Qingdao, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Shandong Prov Key Lab Expt Marine Biol, Qingdao, Peoples R China 4.Univ Chinese Acad Sci, Coll Marine Sci, Qingdao, Peoples R China 5.Minist Nat Resources, Inst Oceanog 3, Xiamen, Peoples R China
第一作者单位	中国科学院海洋研究所
通讯作者单位	中国科学院海洋研究所
推荐引用方式 GB/T 7714	Cheng, Jiao,Zhang, Liwen,Hui, Min,et al. Insights into adaptive divergence of Japanese mantis shrimp Oratosquilla oratoria inferred from comparative analysis of full-length transcriptomes[J]. FRONTIERS IN MARINE SCIENCE,2022,9:15.
APA	Cheng, Jiao,Zhang, Liwen,Hui, Min,Li, Yuan,&Sha, Zhongli.(2022).Insights into adaptive divergence of Japanese mantis shrimp Oratosquilla oratoria inferred from comparative analysis of full-length transcriptomes.FRONTIERS IN MARINE SCIENCE,9,15.
MLA	Cheng, Jiao,et al."Insights into adaptive divergence of Japanese mantis shrimp Oratosquilla oratoria inferred from comparative analysis of full-length transcriptomes".FRONTIERS IN MARINE SCIENCE 9(2022):15.