Molecular diversity of foraminiferal eDNA in sediments and their correlations with environmental factors from the Yellow Sea

doi:10.1016/j.ecolind.2022.109294

	Molecular diversity of foraminiferal eDNA in sediments and their correlations with environmental factors from the Yellow Sea
	Cao, Yifei 1,6; Lei, Yanli1,3,6,7 ; Fang, James Kar -Hei 4,5; Li, Tiegang2,8
	2022-09-01
发表期刊	ECOLOGICAL INDICATORS
ISSN	1470-160X
卷号	142 页码:13
通讯作者	Lei, Yanli([email protected]) ; Li, Tiegang([email protected])
摘要	Foraminiferal environmental DNA (eDNA) is an efficient and reliable indicator of environmental changes. Here, we investigated the foraminiferal diversity of 25 stations (33-36 degrees N) in the Yellow Sea based on eDNA and presented the first assessment on the correlations between foraminifera diversity and environmental conditions in the region. A total of 71 sediment samples were collected and local environmental parameters were measured. The foraminiferal eDNA was extracted from the samples and part of the small subunit (SSU) rRNA gene was amplified from the samples. After high-throughput sequencing, 1,701,899 amplified reads were detected and clustered into 426 operational taxonomic units (OTUs). The benthic foraminiferal eDNA community diversity and group diversity showed significant positive correlations with water depth and total inorganic carbon (TIC) in sediments, and significant negative correlations with temperature and total organic carbon (TOC) in sediments. However, in terms of the correlation between relative abundance and environmental factors, there were wide variations from species to species. In this work, planktic foraminiferal eDNA was detected in the sediments, and its OTUs number could reflect the changes in ocean currents and upper layer water masses to a certain extent. This is the first study on relationship of foraminiferal eDNA and environmental factors in the Yellow Sea shelf region of the western Pacific Ocean, and it demonstrates that community parameters in foraminiferal eDNA could be a valuable proxy for environmental changes in the shelf sea.
关键词	Foraminiferal eDNA Environmental factors Community diversity Yellow Sea
DOI	10.1016/j.ecolind.2022.109294
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China[41976058]; National Natural Science Foundation of China[U1906211]; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB42000000]; Wenhai Program of QNLM[2021WHZZB0804]
WOS研究方向	Biodiversity & Conservation ; Environmental Sciences & Ecology
WOS类目	Biodiversity Conservation ; Environmental Sciences
WOS记录号	WOS:000861982800001
出版者	ELSEVIER
引用统计	被引频次：8[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/180685
专题	海洋生物分类与系统演化实验室
通讯作者	Lei, Yanli; Li, Tiegang
作者单位	1.Chinese Acad Sci, Inst Oceanol, Ctr Ocean Mega Sci, Lab Marine Organism Taxon & Phylogeny, Qingdao 266071, Peoples R China 2.Minist Nat Resources Peoples Republ China, Inst Oceanog 1, Lab Marine Sedimentol & Environm Geol, Qingdao 266061, Peoples R China 3.Southern Marine Sci & Engn Guangdong Lab Zhuhai, Zhuhai 519082, Peoples R China 4.Hong Kong Polytech Univ, Dept Appl Biol & Chem Technol, Hong Kong 999077, Peoples R China 5.City Univ Hong Kong, State Key Lab Marine Pollut, Hong Kong 999077, Peoples R China 6.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 7.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China 8.Minist Nat Resources Peoples Republ China, Inst Oceanog 1, Qingdao 266061, Peoples R China
推荐引用方式 GB/T 7714	Cao, Yifei,Lei, Yanli,Fang, James Kar -Hei,et al. Molecular diversity of foraminiferal eDNA in sediments and their correlations with environmental factors from the Yellow Sea[J]. ECOLOGICAL INDICATORS,2022,142:13.
APA	Cao, Yifei,Lei, Yanli,Fang, James Kar -Hei,&Li, Tiegang.(2022).Molecular diversity of foraminiferal eDNA in sediments and their correlations with environmental factors from the Yellow Sea.ECOLOGICAL INDICATORS,142,13.
MLA	Cao, Yifei,et al."Molecular diversity of foraminiferal eDNA in sediments and their correlations with environmental factors from the Yellow Sea".ECOLOGICAL INDICATORS 142(2022):13.

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