Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)

doi:10.3389/fmars.2022.991391

IOCAS-IR > 实验海洋生物学重点实验室

	Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)
	Yu, Yifei 1; Nong, Wenyan 1; So, Wai Lok 1; Xie, Yichun 1; Yip, Ho Yin 1; Haimovitz, Jasmine 2; Swale, Thomas 2; Baker, David M. M.3; Bendena, William G. G.; Chan, Ting Fung 5; Chui, Apple P. Y.5; Lau, Kwok Fai 5; Qian, Pei-Yuan 6,7,8; Qiu, Jian-Wen 6,9; Thibodeau, Benoit 5; Xu, Fei 10,11; Hui, Jerome H. L.1
	2022-09-27
发表期刊	FRONTIERS IN MARINE SCIENCE
卷号	9 页码:12
通讯作者	Hui, Jerome H. L.([email protected])
摘要	Coral reefs are under stress throughout the world. To better understand the molecular mechanisms underlying coral biology and their genomic evolution, here we sequenced the genome and transcriptomes of elegance coral Catalaphyllia jardinei (Euphylliidae). This monotypic genus stony coral is widespread but rare, being found across the Indo-West Pacific, from the northern Indian Ocean, Australia, Philippines, to the South China Sea. Due to its popularity among aquarium hobbyists, it is an overexploited species collected in large quantities from the wild for aquarium trade. The assembled genome is similar to 651.3 Mb in total length and of high physical contiguity with a scaffold N50 size of 28.9 Mb. The gene copy numbers of abiotic stress regulator (heat shock protein family genes) and neuropeptides (GLWamide, GRFamide, PRGamide and HIRamide) are similar to other sequenced anthozoans, and we have also identified the first set of sesquiterpenoid biosynthetic pathway genes in coral. Sequencing of small RNAs allows us to identify 35 microRNAs in C. jardinei and update the number of conserved microRNAs in cnidarians. This study established a foundation for further investigation into the roles of sesquiterpenoids and microRNAs in development of coral and understand their responses to climate change. Due to the easiness to culture C. jardinei in reef tanks and the established resources in this study, we propose this species be adopted as a new laboratory model in environmental and ecological experiments aiming to understand coral biology and responses to environmental stressors.
关键词	coral genome Catalaphyllia microRNA sesquiterpenoid
DOI	10.3389/fmars.2022.991391
收录类别	SCI
语种	英语
资助项目	Hong Kong Research Grant Council Collaborative Research Grant[C4015-20EF]; Hong Kong Research Grant Council Collaborative Research Grant[C7013-19G]; Open Collaborative Research Fund and Operation Fund from the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)[HKB L20200008]; Center for Ocean Research in Hong Kong and Macau (CORE); Chinese University of Hong Kong[4053489]; Chinese University of Hong Kong[4053547]; Chinese University of Hong Kong; TUYF Charitable Trust; General Research Fund[14100919]; General Research Fund[14100420]
WOS研究方向	Environmental Sciences & Ecology ; Marine & Freshwater Biology
WOS类目	Environmental Sciences ; Marine & Freshwater Biology
WOS记录号	WOS:000874602800001
出版者	FRONTIERS MEDIA SA
引用统计	被引频次：1[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/180534
专题	实验海洋生物学重点实验室
通讯作者	Hui, Jerome H. L.
作者单位	1.Chinese Univ Hong Kong, Sch Life Sci, Simon FS Li Marine Sci Lab, State Key Lab Agrobiotechnol, Hong Kong, Peoples R China 2.Dovetail Genom, California, CA USA 3.Univ Hong Kong, Sch Biol Sci, Hong Kong, Peoples R China 4.Queens Univ, Dept Biol, Kingston, ON, Canada 5.Chinese Univ Hong Kong, Sch Life Sci, Hong Kong, Peoples R China 6.Southern Marine Sci & Engn Guangdong Lab Guangzhou, Guangzhou, Peoples R China 7.Hong Kong Univ Sci & Technol, Dept Ocean Sci, Hong Kong, Peoples R China 8.Hong Kong Univ Sci & Technol, Southern Marine Sci & Engn Guangdong Lab Guangzhou, Hong Kong, Peoples R China 9.Hong Kong Baptist Univ, Dept Biol, Hong Kong, Peoples R China 10.Chinese Acad Sci, Inst Oceanol, Ctr Ocean Mega Sci, Shandong Prov Key Lab Expt Marine Biol, Qingdao, Peoples R China 11.Chinese Acad Sci, Inst Oceanol, Ctr Ocean Mega Sci, CAS, Qingdao, Peoples R China
推荐引用方式 GB/T 7714	Yu, Yifei,Nong, Wenyan,So, Wai Lok,et al. Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)[J]. FRONTIERS IN MARINE SCIENCE,2022,9:12.
APA	Yu, Yifei.,Nong, Wenyan.,So, Wai Lok.,Xie, Yichun.,Yip, Ho Yin.,...&Hui, Jerome H. L..(2022).Genome of elegance coral Catalaphyllia jardinei (Euphylliidae).FRONTIERS IN MARINE SCIENCE,9,12.
MLA	Yu, Yifei,et al."Genome of elegance coral Catalaphyllia jardinei (Euphylliidae)".FRONTIERS IN MARINE SCIENCE 9(2022):12.

条目包含的文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
fmars-09-991391.pdf（2530KB）	期刊论文	出版稿	限制开放	CC BY-NC-SA	浏览