Genome-scale signatures of adaptive gene expression changes in an invasive seaweed Gracilaria vermiculophylla

doi:10.1111/mec.16776

IOCAS-IR > 实验海洋生物学重点实验室

	Genome-scale signatures of adaptive gene expression changes in an invasive seaweed Gracilaria vermiculophylla
	Xiang, Jin-Xi 1; Saha, Mahasweta 2,3; Zhong, Kai-Le 4,8; Zhang, Quan-Sheng 1; Zhang, Di 1; Jueterbock, Alexander 5; Krueger-Hadfield, Stacy A.6; Wang, Gao-Ge 7; Weinberger, Florian 2; Hu, Zi-Min 1
	2022-11-20
发表期刊	MOLECULAR ECOLOGY
ISSN	0962-1083
页码	15
通讯作者	Hu, Zi-Min([email protected])
摘要	Invasive species can successfully and rapidly colonize new niches and expand ranges via founder effects and enhanced tolerance towards environmental stresses. However, the underpinning molecular mechanisms (i.e., gene expression changes) facilitating rapid adaptation to harsh environments are still poorly understood. The red seaweed Gracilaria vermiculophylla, which is native to the northwest Pacific but invaded North American and European coastal habitats over the last 100 years, provides an excellent model to examine whether enhanced tolerance at the level of gene expression contributed to its invasion success. We collected G. vermiculophylla from its native range in Japan and from two non-native regions along the Delmarva Peninsula (Eastern United States) and in Germany. Thalli were reared in a common garden for 4 months at which time we performed comparative transcriptome (mRNA) and microRNA (miRNA) sequencing. MRNA-expression profiling identified 59 genes that were differently expressed between native and non-native thalli. Of these genes, most were involved in metabolic pathways, including photosynthesis, abiotic stress, and biosynthesis of products and hormones in all four non-native sites. MiRNA-based target-gene correlation analysis in native/non-native pairs revealed that some target genes are positively or negatively regulated via epigenetic mechanisms. Importantly, these genes are mostly associated with metabolism and defence capability (e.g., metal transporter Nramp5, senescence-associated protein, cell wall-associated hydrolase, ycf68 protein and cytochrome P450-like TBP). Thus, our gene expression results indicate that resource reallocation to metabolic processes is most likely a predominant mechanism contributing to the range-wide persistence and adaptation of G. vermiculophylla in the invaded range. This study, therefore, provides molecular insight into the speed and nature of invasion-mediated rapid adaption.
关键词	Agarophyton vermiculophyllum environmental adaptation metabolic pathways miRNA-mediated epigenetic regulation resource allocation transcriptional profile
DOI	10.1111/mec.16776
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China; College of Arts and Sciences at the University of Alabama at Birmingham; [31971395]; [GZ1357]
WOS研究方向	Biochemistry & Molecular Biology ; Environmental Sciences & Ecology ; Evolutionary Biology
WOS类目	Biochemistry & Molecular Biology ; Ecology ; Evolutionary Biology
WOS记录号	WOS:000888360200001
出版者	WILEY
引用统计	被引频次：4[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/180260
专题	实验海洋生物学重点实验室
通讯作者	Hu, Zi-Min
作者单位	1.YanTai Univ, Ocean Sch, Yantai 264005, Peoples R China 2.GEOMAR Helmholtz Zent Ozeanforschung Kiel, Marine Ecol Div, Kiel, Germany 3.Plymouth Marine Lab, Marine Ecol & Biodivers, Plymouth, Devon, England 4.Chinese Acad Sci, Inst Oceanol, Ctr Ocean Mega Sci, Key Lab Expt Marine Biol, Qingdao, Peoples R China 5.Nord Univ, Fac Biosci & Aquaculture, Algal & Microbial Biotechnol Div, Bodo, Norway 6.Univ Alabama Birmingham, Dept Biol, Birmingham, AL USA 7.Ocean Univ China, Inst Evolut & Marine Biodivers, Coll Marine Life Sci, Qingdao, Peoples R China 8.Univ Hong Kong, Sch Biol Sci, Hong Kong, Peoples R China
推荐引用方式 GB/T 7714	Xiang, Jin-Xi,Saha, Mahasweta,Zhong, Kai-Le,et al. Genome-scale signatures of adaptive gene expression changes in an invasive seaweed Gracilaria vermiculophylla[J]. MOLECULAR ECOLOGY,2022:15.
APA	Xiang, Jin-Xi.,Saha, Mahasweta.,Zhong, Kai-Le.,Zhang, Quan-Sheng.,Zhang, Di.,...&Hu, Zi-Min.(2022).Genome-scale signatures of adaptive gene expression changes in an invasive seaweed Gracilaria vermiculophylla.MOLECULAR ECOLOGY,15.
MLA	Xiang, Jin-Xi,et al."Genome-scale signatures of adaptive gene expression changes in an invasive seaweed Gracilaria vermiculophylla".MOLECULAR ECOLOGY (2022):15.

条目包含的文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
Genome‐scale signatu（894KB）	期刊论文	出版稿	限制开放	CC BY-NC-SA	浏览