Vibrio profundi sp. nov., isolated from a deep-sea seamount

doi:10.1007/s10482-019-01286-4

IOCAS-IR

	Vibrio profundi sp. nov., isolated from a deep-sea seamount
	Zhang, Nai-Xing 1,2; Zhang, De-Chao 3,4,5; Qiao, Neng-Hu 4,6
	2019-11-01
发表期刊	ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
ISSN	0003-6072
卷号	112 期号:11 页码:1603-1610
通讯作者	Zhang, De-Chao([email protected])
摘要	A Gram-stain negative, rod-shaped, facultative anaerobic, motile bacterial strain, designated TP187(T), was isolated from a seamount near the Yap Trench in the tropical western Pacific. Phylogenetic analysis based on the 16S rRNA gene sequence showed that strain TP187(T) is related to members of the genus Vibrio and has high 16S rRNA gene sequence similarity with the type strains of Vibrio chagasii (97.3%) and Vibrio gallaecicus (97.1%). Sequence similarities to all other type strains of current species of the genus Vibrio were below 97%. The polar lipids profile was found to contain diphosphatidylglycerol, phosphatidylglycerol, an aminophospholipid, two aminolipids, four phospholipids and eleven unidentified polar lipids. Ubiquinone Q-8 was detected as the predominant quinone. The genomic DNA G + C content of strain TP187(T) was determined to be 43.7 mol%. In addition, the maximum values of in silico DNA-DNA hybridization (isDDH) and average nucleotide identity (ANI) between strain TP187(T) with V. chagasii LMG 21353(T) were 22.40 and 77.50% respectively. Both values are below the proposed cutoff levels for species delineation, i.e. 70 and 95%, respectively. Combined data from phenotypic, phylogenetic, isDDH and ANI data demonstrated that the strain TP187(T) is representative of a novel species of the genus Vibrio, for which we propose the name Vibrio profundi sp. nov. (type strain TP187(T) = KACC 18555(T) = CGMCC 1.15395(T)).
关键词	Vibrio Coral Seamount
DOI	10.1007/s10482-019-01286-4
收录类别	SCI
语种	英语
资助项目	Senior User Project of RV KEXUE[KEXUE2019G09]###3237; Science & Technology Basic Resources Investigation Program of China[2017FY100804]###2020; Shandong Provincial Key Laboratory of Marine Ecological Environment and Disaster Prevention and Mitigation[201802]###3238; Senior User Project of RV KEXUE[KEXUE2019G09]; Science & Technology Basic Resources Investigation Program of China[2017FY100804]; Shandong Provincial Key Laboratory of Marine Ecological Environment and Disaster Prevention and Mitigation[201802]
WOS研究方向	Microbiology
WOS类目	Microbiology
WOS记录号	WOS:000491066900003
出版者	SPRINGER
引用统计	被引频次：6[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/163242
专题	中国科学院海洋研究所
通讯作者	Zhang, De-Chao
作者单位	1.Shandong Prov Key Lab Marine Ecol Environm & Disa, Qingdao 266033, Shandong, Peoples R China 2.SOA, North China Sea Forecast Ctr, Qingdao 266033, Shandong, Peoples R China 3.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Shandong, Peoples R China 4.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 5.Chinese Acad Sci, Ctr Ocean Mega Sci, 7 Nanhai Rd, Qingdao 266071, Shandong, Peoples R China 6.Chinese Acad Sci, State Key Lab Urban & Reg Ecol, Res Ctr Ecoenvironm Sci, Beijing 100085, Peoples R China
通讯作者单位	中国科学院海洋研究所
推荐引用方式 GB/T 7714	Zhang, Nai-Xing,Zhang, De-Chao,Qiao, Neng-Hu. Vibrio profundi sp. nov., isolated from a deep-sea seamount[J]. ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,2019,112(11):1603-1610.
APA	Zhang, Nai-Xing,Zhang, De-Chao,&Qiao, Neng-Hu.(2019).Vibrio profundi sp. nov., isolated from a deep-sea seamount.ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY,112(11),1603-1610.
MLA	Zhang, Nai-Xing,et al."Vibrio profundi sp. nov., isolated from a deep-sea seamount".ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY 112.11(2019):1603-1610.

条目包含的文件
文件名称/大小	文献类型	版本类型	开放类型	使用许可
Zhang-2019-Vibrio-pr（279KB）	期刊论文	出版稿	限制开放	CC BY-NC-SA	浏览
Vibrio profundi sp. （279KB）	期刊论文	出版稿	限制开放	CC BY-NC-SA	浏览