Institutional Repository of Key Laboratory of Marine Ecology & Environmental Sciences, CAS
| Population Genomic Signatures of Genetic Structure and Environmental Selection in the Catadromous Roughskin Sculpin Trachidermus fasciatus | |
Li, Yu-Long1,2,3 ; Xue, Dong-Xiu1,2,3; Zhang, Bai-Dong1,2,3; Liu, Jin-Xian1,2,3
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| 2019-07-01 | |
| 发表期刊 | GENOME BIOLOGY AND EVOLUTION
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| ISSN | 1759-6653 |
| 卷号 | 11期号:7页码:1751-1764 |
| 通讯作者 | Liu, Jin-Xian([email protected]) |
| 摘要 | Understanding the patterns of genetic diversity and adaptation across species' range is crucial to assess its long-term persistence and determine appropriate conservation measures. The impacts of human activities on the genetic diversity and genetic adaptation to heterogeneous environments remain poorly understood in the marine realm. The roughskin sculpin (Trachidermus fasciatus) is a small catadromous fish, and has been listed as a second-class state protected aquatic animal since 1988 in China. To elucidate the underlying mechanism of population genetic structuring and genetic adaptations to local environments, RAD tags were sequenced for 202 individuals in nine populations across the range of T. fasciatus in China. The pairwise FST values over 9,271 filtered SNPs were significant except that between Dongying and Weifang. All the genetic clustering analysis revealed significant population structure with high support for eight distinct genetic clusters. Both the minor allele frequency spectra and Ne estimations suggested extremely small Ne in some populations (e.g., Qinhuangdao, Rongcheng, Wendeng, and Qingdao), which might result from recent population bottleneck. The strong genetic structure can be partly attributed to genetic drift and habitat fragmentation, likely due to the anthropogenic activities. Annotations of candidate adaptive loci suggested that genes involved in metabolism, development, and osmoregulation were critical for adaptation to spatially heterogenous environment of local populations. In the context of anthropogenic activities and environmental change, results of the present population genomic work provided important contributions to the understanding of genetic differentiation and adaptation to changing environments. |
| 关键词 | population structure local adaptation Trachidermus fasciatus habitat fragmentation RAD-seq |
| DOI | 10.1093/gbe/evz118 |
| 收录类别 | SCI |
| 语种 | 英语 |
| 资助项目 | National Natural Science Foundation of China[31502169]###3130; National Natural Science Foundation of China[41676137]###3131; NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences[U1606404]###387; Aoshan Talents Program###288; Qingdao National Laboratory of Marine Science and Technology[2015ASTP-ES05]###383; National Natural Science Foundation of China[31502169]; National Natural Science Foundation of China[41676137]; NSFC-Shandong Joint Fund for Marine Ecology and Environmental Sciences[U1606404]; AoShan Talents Program; Qingdao National Laboratory of Marine Science and Technology[2015ASTP-ES05] |
| WOS研究方向 | Evolutionary Biology ; Genetics & Heredity |
| WOS类目 | Evolutionary Biology ; Genetics & Heredity |
| WOS记录号 | WOS:000484039500005 |
| 出版者 | OXFORD UNIV PRESS |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.qdio.ac.cn/handle/337002/162823 |
| 专题 | 海洋生态与环境科学重点实验室 |
| 通讯作者 | Liu, Jin-Xian |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao, Shandong, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao, Shandong, Peoples R China 3.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao, Shandong, Peoples R China |
| 第一作者单位 | 中国科学院海洋研究所 |
| 通讯作者单位 | 中国科学院海洋研究所 |
| 推荐引用方式 GB/T 7714 | Li, Yu-Long,Xue, Dong-Xiu,Zhang, Bai-Dong,et al. Population Genomic Signatures of Genetic Structure and Environmental Selection in the Catadromous Roughskin Sculpin Trachidermus fasciatus[J]. GENOME BIOLOGY AND EVOLUTION,2019,11(7):1751-1764. |
| APA | Li, Yu-Long,Xue, Dong-Xiu,Zhang, Bai-Dong,&Liu, Jin-Xian.(2019).Population Genomic Signatures of Genetic Structure and Environmental Selection in the Catadromous Roughskin Sculpin Trachidermus fasciatus.GENOME BIOLOGY AND EVOLUTION,11(7),1751-1764. |
| MLA | Li, Yu-Long,et al."Population Genomic Signatures of Genetic Structure and Environmental Selection in the Catadromous Roughskin Sculpin Trachidermus fasciatus".GENOME BIOLOGY AND EVOLUTION 11.7(2019):1751-1764. |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| evz118.pdf（703KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 浏览 | |
| Population Genomic S（705KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 浏览 | |
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