Institutional Repository of Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences
| Penaeid shrimp genome provides insights into benthic adaptation and frequent molting | |
Zhang, Xiaojun1,2; Yuan, Jianbo1,2; Sun, Yamin3; Li, Shihao1,2,4; Gao, Yi1,2,4; Yu, Yang1,2,4 ; Liu, Chengzhang1,2,4; Wang, Quanchao1,2,4; Lv, Xinjia1,5; Zhang, Xiaoxi1,5; Ma, Ka Yan6; Wang, Xiaobo7; Lin, Wenchao4; Wang, Long4; Zhu, Xueli4; Zhang, Chengsong1,2,4; Zhang, Jiquan1,2,4; Jin, Songjun1,2,4; Yu, Kuijie1,2,4; Kong, Jie8; Xu, Peng9; Chen, Jack10; Zhang, Hongbin11; Sorgeloos, Patrick12; Sagi, Amir13,14; Alcivar-Warren, Acacia15; Liu, Zhanjiang16; Wang, Lei17; Ruan, Jue7; Chu, Ka Hou6; Liu, Bin17; Li, Fuhua1,2,4; Xiang, Jianhai1,2,4
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| 2019-01-21 | |
| 发表期刊 | NATURE COMMUNICATIONS
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| ISSN | 2041-1723 |
| 卷号 | 10页码:14 |
| 通讯作者 | Chu, Ka Hou([email protected]) ; Liu, Bin([email protected]) ; Li, Fuhua([email protected]) ; Xiang, Jianhai([email protected]) |
| 摘要 | Crustacea, the subphylum of Arthropoda which dominates the aquatic environment, is of major importance in ecology and fisheries. Here we report the genome sequence of the Pacific white shrimp Litopenaeus vannamei, covering similar to 1.66 Gb (scaffold N50 605.56 Kb) with 25,596 protein-coding genes and a high proportion of simple sequence repeats (>23.93%). The expansion of genes related to vision and locomotion is probably central to its benthic adaptation. Frequent molting of the shrimp may be explained by an intensified ecdysone signal pathway through gene expansion and positive selection. As an important aquaculture organism, L. vannamei has been subjected to high selection pressure during the past 30 years of breeding, and this has had a considerable impact on its genome. Decoding the L. vannamei genome not only provides an insight into the genetic underpinnings of specific biological processes, but also provides valuable information for enhancing crustacean aquaculture. |
| DOI | 10.1038/s41467-018-08197-4 |
| 收录类别 | SCI |
| 语种 | 英语 |
| 资助项目 | State 863 High Technology R&D Project of China[2012AA10A404]###2401; National Natural Science Foundation of China[31830100]###95; National Natural Science Foundation of China[41876167]###483; Qingdao National Laboratory for Marine Science and Technology[MS2017NO04]###2402; Hong Kong Collaborative Research Fund (CRF) project[C4042-14G]###2403; High Performance Computing Center, Institute of Oceanology, CAS###2404; RV KEXUE[KEXUE2018G19]###2405; State 863 High Technology R&D Project of China[2012AA10A404]; National Natural Science Foundation of China[31830100]; National Natural Science Foundation of China[41876167]; Qingdao National Laboratory for Marine Science and Technology[MS2017NO04]; Hong Kong Collaborative Research Fund (CRF) project[C4042-14G]; High Performance Computing Center, Institute of Oceanology, CAS; RV KEXUE[KEXUE2018G19] |
| WOS研究方向 | Science & Technology - Other Topics |
| WOS类目 | Multidisciplinary Sciences |
| WOS记录号 | WOS:000456164800013 |
| 出版者 | NATURE PUBLISHING GROUP |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.qdio.ac.cn/handle/337002/160695 |
| 专题 | 实验海洋生物学重点实验室 |
| 通讯作者 | Chu, Ka Hou; Liu, Bin; Li, Fuhua; Xiang, Jianhai |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266237, Peoples R China 3.Tianjin Biochip Corp, Tianjin 300457, Peoples R China 4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Peoples R China 5.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 6.Chinese Univ Hong Kong, Sch Life Sci, Shatin, Hong Kong 999077, Peoples R China 7.Chinese Acad Agr Sci, Agr Genom Inst, Shenzhen 518120, Peoples R China 8.Chinese Acad Fishery Sci, Yellow Sea Fisheries Res Inst, Minist Agr, Key Lab Sustainable Utilizat Marine Fisheries Res, Qingdao 266071, Peoples R China 9.Xiamen Univ, Coll Ocean & Earth Sci, Xiamen 361102, Peoples R China 10.Simon Fraser Univ, Dept Mol Biol & Biochem, Burnaby, BC V5A 1S6, Canada 11.Texas A&M Univ, Dept Soil & Crop Sci, College Stn, TX 77843 USA 12.Univ Ghent, Lab Aquaculture & Artemia Reference Ctr, Coupure Links 653, B-9000 Ghent, Belgium 13.Negev Ben Gurion Univ, Dept Life Sci, IL-84105 Beer Sheva, Israel 14.Negev Ben Gurion Univ, Natl Inst Biotechnol, IL-84105 Beer Sheva, Israel 15.Environm Genom Inc, POB 196, Southborough, MA 01772 USA 16.Auburn Univ, Sch Fisheries Aquaculture & Aquat Sci, Auburn, AL 36849 USA 17.Nankai Univ, Coll Life Sci, Tianjin 300071, Peoples R China |
| 第一作者单位 | 中国科学院海洋研究所 |
| 通讯作者单位 | 中国科学院海洋研究所 |
| 推荐引用方式 GB/T 7714 | Zhang, Xiaojun,Yuan, Jianbo,Sun, Yamin,et al. Penaeid shrimp genome provides insights into benthic adaptation and frequent molting[J]. NATURE COMMUNICATIONS,2019,10:14. |
| APA | Zhang, Xiaojun.,Yuan, Jianbo.,Sun, Yamin.,Li, Shihao.,Gao, Yi.,...&Xiang, Jianhai.(2019).Penaeid shrimp genome provides insights into benthic adaptation and frequent molting.NATURE COMMUNICATIONS,10,14. |
| MLA | Zhang, Xiaojun,et al."Penaeid shrimp genome provides insights into benthic adaptation and frequent molting".NATURE COMMUNICATIONS 10(2019):14. |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| Penaeid shrimp genom（3152KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 浏览 | |
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