Institutional Repository of Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences
| Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon | |
Yuan, Jianbo1,2; Zhang, Xiaojun1,2; Liu, Chengzhang1; Yu, Yang1 ; Wei, Jiankai3; Li, Fuhua1,2; Xiang, Jianhai1,2
| |
| 2018-06-01 | |
| 发表期刊 | MARINE GENOMICS
 |
| ISSN | 1874-7787 |
| 卷号 | 39页码:22-25 |
| 通讯作者 | Zhang, Xiaojun([email protected]) ; Xiang, Jianhai([email protected]) |
| 摘要 | Penaeid shrimps are among the most economically important crustaceans, which provide an important global food source. These species exhibit complex body plans and novelties, such as segments and appendages, which render them interesting organisms for developmental biology study of crustaceans. However, limited genomic resources have been put forward for the researches of them. Here, we report the genome sequencing and draft assembly of two economically important penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon. A total of 132.86 Gb and 132.83 Gb sequencing data was obtained in the two shrimp species. The genome assembly, a total length of 1.94 Gb and 2.04 Gb in M. japonicus and P. monodon, respectively, covers more than 97% of coding regions. We further identified 626 Mb (34.96%) and 833 Mb (46.68%) repeats, 16,716 and 18,100 genes in these two genomes, respectively. We also identified Hox genes that are important to their body plans. These data will provide valuable resources for the study of selective breeding and some plastic biological characters of penaeid shrimps, including molting, lobstering, brooding eggs and sensitization in humans. |
| 关键词 | Penaeid shrimps Genome Assembly Annotation |
| DOI | 10.1016/j.margen.2017.12.006 |
| 收录类别 | SCI |
| 语种 | 英语 |
| 资助项目 | National Natural Science Foundation of China[41506189]###485; National Natural Science Foundation of China[31672632]###1461; National Natural Science Foundation of China[41376165]###678; China Agriculture Research system-48 (CARS-48)###148; Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02]###218; National Natural Science Foundation of China[41506189]###485; National Natural Science Foundation of China[31672632]###1461; National Natural Science Foundation of China[41376165]###678; China Agriculture Research system-48 (CARS-48)###148; Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02]###218; National Natural Science Foundation of China[41506189]; National Natural Science Foundation of China[31672632]; National Natural Science Foundation of China[41376165]; China Agriculture Research system-48 (CARS-48); Scientific and Technological Innovation Project - Qingdao National Laboratory for Marine Science and Technology[2015ASKJ02] |
| WOS研究方向 | Genetics & Heredity ; Marine & Freshwater Biology |
| WOS类目 | Genetics & Heredity ; Marine & Freshwater Biology |
| WOS记录号 | WOS:000436207800007 |
| 出版者 | ELSEVIER SCIENCE BV |
| 引用统计 | |
| 文献类型 | 期刊论文 |
| 条目标识符 | http://ir.qdio.ac.cn/handle/337002/159491 |
| 专题 | 实验海洋生物学重点实验室 |
| 通讯作者 | Zhang, Xiaojun; Xiang, Jianhai |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266071, Peoples R China 3.Ocean Univ China, Coll Marine Life Sci, Minist Educ, Key Lab Marine Genet & Breeding, Qingdao 266003, Peoples R China |
| 第一作者单位 | 实验海洋生物学重点实验室 |
| 通讯作者单位 | 实验海洋生物学重点实验室 |
| 推荐引用方式 GB/T 7714 | Yuan, Jianbo,Zhang, Xiaojun,Liu, Chengzhang,et al. Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon[J]. MARINE GENOMICS,2018,39:22-25. |
| APA | Yuan, Jianbo.,Zhang, Xiaojun.,Liu, Chengzhang.,Yu, Yang.,Wei, Jiankai.,...&Xiang, Jianhai.(2018).Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon.MARINE GENOMICS,39,22-25. |
| MLA | Yuan, Jianbo,et al."Genomic resources and comparative analyses of two economical penaeid shrimp species, Marsupenaeus japonicus and Penaeus monodon".MARINE GENOMICS 39(2018):22-25. |
| 条目包含的文件 | ||||||
| 文件名称/大小 | 文献类型 | 版本类型 | 开放类型 | 使用许可 | ||
| Genomic resources an（250KB） | 期刊论文 | 出版稿 | 限制开放 | CC BY-NC-SA | 浏览 | |
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。
修改评论