Draft genome of the Peruvian scallop Argopecten purpuratus

doi:10.1093/gigascience/giy031

IOCAS-IR > 实验海洋生物学重点实验室

	Draft genome of the Peruvian scallop Argopecten purpuratus
	Li, Chao 1; Liu, Xiao 2; Liu, Bo 1; Ma, Bin 3; Liu, Fengqiao 1; Liu, Guilong 1; Shi, Qiong 4; Wang, Chunde 1
	2018-04-02
发表期刊	GIGASCIENCE
ISSN	2047-217X
卷号	7 期号:4 页码:6
通讯作者	Wang, Chunde([email protected])
摘要	Background: The Peruvian scallop, Argopecten purpuratus, is mainly cultured in southern Chile and Peru was introduced into China in the last century. Unlike other Argopecten scallops, the Peruvian scallop normally has a long life span of up to 7 to 10 years. Therefore, researchers have been using it to develop hybrid vigor. Here, we performed whole genome sequencing, assembly, and gene annotation of the Peruvian scallop, with an important aim to develop genomic resources for genetic breeding in scallops. Findings: A total of 463.19-Gb raw DNA reads were sequenced. A draft genome assembly of 724.78 Mb was generated (accounting for 81.87% of the estimated genome size of 885.29 Mb), with a contig N50 size of 80.11 kb and a scaffold N50 size of 1.02 Mb. Repeat sequences were calculated to reach 33.74% of the whole genome, and 26,256 protein-coding genes and 3,057 noncoding RNAs were predicted from the assembly. Conclusions: We generated a high-quality draft genome assembly of the Peruvian scallop, which will provide a solid resource for further genetic breeding and for the analysis of the evolutionary history of this economically important scallop.
关键词	Argopecten purpuratus Peruvian scallop genome assembly annotation gene prediction phylogenetic analysis
DOI	10.1093/gigascience/giy031
收录类别	SCI
语种	英语
资助项目	National Natural Science Foundation of China[31572618]###1883; National Natural Science Foundation of China[41676152]###1167; earmarked fund for Shandong Modern Agro-Industry Technology Research System[SDAIT-14]###1884; National Natural Science Foundation of China[31572618]; National Natural Science Foundation of China[41676152]; earmarked fund for Shandong Modern Agro-Industry Technology Research System[SDAIT-14]
WOS研究方向	Science & Technology - Other Topics
WOS类目	Multidisciplinary Sciences
WOS记录号	WOS:000433063800001
出版者	OXFORD UNIV PRESS
引用统计	被引频次：48[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/159218
专题	实验海洋生物学重点实验室
通讯作者	Wang, Chunde
作者单位	1.Qingdao Agr Univ, Marine Sci & Engn Coll, Qingdao 266109, Peoples R China 2.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China 3.Qingdao Oceanwide BioTech Co Ltd, Qingdao 266101, Peoples R China 4.BGI Acad Marine Sci, Shenzhen Key Lab Marine Genom, Guangdong Prov Key Lab Mol Breeding Marine Econ A, BGI Marine,BGI, Shenzhen 518083, Peoples R China
推荐引用方式 GB/T 7714	Li, Chao,Liu, Xiao,Liu, Bo,et al. Draft genome of the Peruvian scallop Argopecten purpuratus[J]. GIGASCIENCE,2018,7(4):6.
APA	Li, Chao.,Liu, Xiao.,Liu, Bo.,Ma, Bin.,Liu, Fengqiao.,...&Wang, Chunde.(2018).Draft genome of the Peruvian scallop Argopecten purpuratus.GIGASCIENCE,7(4),6.
MLA	Li, Chao,et al."Draft genome of the Peruvian scallop Argopecten purpuratus".GIGASCIENCE 7.4(2018):6.

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文件名称/大小	文献类型	版本类型	开放类型	使用许可
Draft genome of the （1213KB）	期刊论文	出版稿	限制开放	CC BY-NC-SA	浏览