Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing

doi:10.1016/j.margen.2018.10.002

	Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing
	Song, Hao 1,2,4; Yang, Meijie 1,2,3; Yu, Zhenglin 1,2,3; Zhang, Tao1,2,4
	2019-04-01
发表期刊	MARINE GENOMICS
ISSN	1874-7787
卷号	44 页码:74-77
通讯作者	Zhang, Tao([email protected])
摘要	The veined rapa whelk (Rapana venosa) is an important commercial gastropod in China but is also an important invasive pest worldwide. Lack of genome information restricts investigation of this species. Here we report the first full-length transcriptome database derived from six different developmental stages of the whelk obtained using the PacBio Iso-Seq. As a result, 88,162 high-quality and full-length unigenes were obtained with average length of 2895 bp, among which 70,496 unigenes were successfully annotated, and 192,951 CDS regions, 1182 transcription factors, 284,387 microsatellite loci, and 27,222 lncRNAs were indentified. This study provides a valuable resource for characterizing the R. venosa transcriptome and for future analyses of gene expression profiles.
关键词	Iso-Seq Transcriptome Gastropod Rapana venosa
DOI	10.1016/j.margen.2018.10.002
收录类别	SCI
语种	英语
资助项目	China Scholarship Council###77; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology[LMEES-CTSP-2018-1]###161; Primary Research & Development Plan of Shandong Province[2016ZDJS06A02]###160; project of blue industry leading talent team of Yantai double hundred plan###159; industry leading talents project of Taishan scholars###158; earmarked fund for Modern Agro-industry Technology Research System[CARS-49]###157; National Natural Science Foundation of China[31572636]###156; National Natural Science Foundation of China[31572636]; earmarked fund for Modern Agro-industry Technology Research System[CARS-49]; industry leading talents project of Taishan scholars; project of blue industry leading talent team of Yantai double hundred plan; Primary Research & Development Plan of Shandong Province[2016ZDJS06A02]; Creative Team Project of the Laboratory for Marine Ecology and Environmental Science, Qingdao National Laboratory for Marine Science and Technology[LMEES-CTSP-2018-1]; China Scholarship Council
WOS研究方向	Genetics & Heredity ; Marine & Freshwater Biology
WOS类目	Genetics & Heredity ; Marine & Freshwater Biology
WOS记录号	WOS:000462800700011
出版者	ELSEVIER SCIENCE BV
引用统计	被引频次：9[WOS] [WOS记录] [WOS相关记录]
文献类型	期刊论文
条目标识符	http://ir.qdio.ac.cn/handle/337002/154947
专题	海洋生态与环境科学重点实验室
通讯作者	Zhang, Tao
作者单位	1.Chinese Acad Sci, Inst Oceanol, CAS Key Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China 2.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Ecol & Environm Sci, Qingdao 266071, Shandong, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 4.Chinese Acad Sci, Ctr Ocean Mega Sci, Qingdao 266071, Shandong, Peoples R China
第一作者单位	中国科学院海洋研究所
通讯作者单位	中国科学院海洋研究所
推荐引用方式 GB/T 7714	Song, Hao,Yang, Meijie,Yu, Zhenglin,et al. Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing[J]. MARINE GENOMICS,2019,44:74-77.
APA	Song, Hao,Yang, Meijie,Yu, Zhenglin,&Zhang, Tao.(2019).Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing.MARINE GENOMICS,44,74-77.
MLA	Song, Hao,et al."Characterization of the whole transcriptome of whelk Rapana venosa by single-molecule mRNA sequencing".MARINE GENOMICS 44(2019):74-77.

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